PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538823.1_FGP032
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MIKC_MADS
Protein Properties Length: 421aa    MW: 46878.2 Da    PI: 9.5953
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538823.1_FGP032genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF95.52.3e-30959151
                       S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
             SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                       krien++ rqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyeys+
  KN538823.1_FGP032  9 KRIENTTSRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSN 59
                       79***********************************************95 PP

2K-box98.41e-3210119110100
              K-box  10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                        e + ++++qqe+akL+ +i++Lq++++hl+G+++++LslkeL+qLe++Lek++ kiR++Knell ++i+++ k+e elq++n++Lr+k++e
  KN538823.1_FGP032 101 EVNAQQYYQQESAKLRHQIQMLQNTNKHLVGDNVSNLSLKELKQLESRLEKGIAKIRARKNELLASEINYMAKREIELQNDNMDLRTKIAE 191
                        567789**********************************************************************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006633.557161IPR002100Transcription factor, MADS-box
SMARTSM004323.4E-41160IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.5E-29264IPR002100Transcription factor, MADS-box
CDDcd002651.58E-39290No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-31323IPR002100Transcription factor, MADS-box
PfamPF003193.6E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-312338IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-313859IPR002100Transcription factor, MADS-box
PfamPF014862.2E-24102189IPR002487Transcription factor, K-box
PROSITE profilePS5129714.968105195IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048283Biological Processindeterminate inflorescence morphogenesis
GO:0048481Biological Processplant ovule development
GO:0090376Biological Processseed trichome differentiation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    Send to blast
MGRGRIEIKR IENTTSRQVT FCKRRNGLLK KAYELSVLCD AEVALIVFSS RGRLYEYSNN  60
NNYLKKDYSV LIFLVLCVKA TIDRYKKAHA CGSTSGAPLI EVNAQQYYQQ ESAKLRHQIQ  120
MLQNTNKHLV GDNVSNLSLK ELKQLESRLE KGIAKIRARK NELLASEINY MAKREIELQN  180
DNMDLRTKIA EEEQQLQQVT VARSAAMELQ AAAAAAQQQN PFAVAAAQLD MKCFFPVNLF  240
EAAAQEKYEG TKELPGAKKF RKAGMKNLDH LRVMFDDIAS NGVDHTPVPA TSSPSTPESP  300
VNVANLDGLD NDMEDNDDTQ LEEESPSNRN KKRPRHANNA NKNKSSRTEI ALLMQAQLKG  360
MADLAEKAQA TFENFTSLVG SLGSSIHFKQ NSVANMIQKS MGTRFTVGKP VTGGNKADRS  420
S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_S4e-18161161Myocyte-specific enhancer factor 2B
1tqe_R4e-18161161Myocyte-specific enhancer factor 2B
1tqe_Q4e-18161161Myocyte-specific enhancer factor 2B
1tqe_P4e-18161161Myocyte-specific enhancer factor 2B
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1516930.0AF151693.1 Oryza sativa transcription factor (MADS13) mRNA, complete cds.
GenBankAK0704250.0AK070425.1 Oryza sativa Japonica Group cDNA clone:J023050A03, full insert sequence.
GenBankAY3324750.0AY332475.1 Oryza sativa (japonica cultivar-group) MADS protein (MAF1) mRNA, complete cds.
GenBankFJ7509410.0FJ750941.1 Oryza sativa clone KCS112D08 MADS-box transcription factor 13 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015618487.11e-148PREDICTED: MADS-box transcription factor 13 isoform X2
RefseqXP_015618486.11e-148PREDICTED: MADS-box transcription factor 13 isoform X2
SwissprotQ2QW531e-149MAD13_ORYSJ; MADS-box transcription factor 13
TrEMBLA0A0E0FAI91e-151A0A0E0FAI9_9ORYZ; Uncharacterized protein
STRINGLOC_Os12g10540.11e-147(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP64937144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18960.11e-78MIKC_MADS family protein